PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013079
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 237aa    MW: 27109.5 Da    PI: 6.5108
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013079genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31104163159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++DgynWrKYGqK+ +++++pr+YY+C++a +Cpvkkkv+rs edp++++ +YegeHnh+
  PGSC0003DMP400013079 104 VKDGYNWRKYGQKVTRDNPYPRAYYKCSFApTCPVKKKVQRSIEDPSILVAVYEGEHNHP 163
                           58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-3095165IPR003657WRKY domain
PROSITE profilePS5081127.33699165IPR003657WRKY domain
SuperFamilySSF1182901.44E-26100165IPR003657WRKY domain
SMARTSM007748.6E-35104164IPR003657WRKY domain
PfamPF031063.2E-25105163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MQRETLDEEL IRMREENKKL VTMLTNLCEN YNSLQTHLIE LLQKYSTHNE EDNSNLLLPR  60
KRKAEEECCV NNFEEASPKR PREITTNVST VCVKTNRSDQ TSVVKDGYNW RKYGQKVTRD  120
NPYPRAYYKC SFAPTCPVKK KVQRSIEDPS ILVAVYEGEH NHPHPSQTEI TVPLVNQDVT  180
TDPTFSNKFM EDIDTNSLQQ HLVQQMASSL TSSPTFTAAV AAAISGKIFE YDLPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21981661178Probable WRKY transcription factor 4
2lex_A1e-21981661178Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361532.11e-176PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH75e-63WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLM1ABK11e-178M1ABK1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000190581e-176(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-64WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]